SE3020127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_264
  • Malus domestica
  • SE3020127
  • Mutator
  • MadM5
  • MDC006339.627:3214-3401
  • ATGGTCCAT
  • TGGTCCATGAGATATTTTTCAATGTGATCGGTACATGGGATGGTATACCACGTGTCACTATACAAATGGTGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
A   T        T        A      C  T       A      AC       CAC    C  A     A  TATATG    -AAG     A
 TGG CCATGAGA ATTTTTCA TGTGAT GG ACATGGG TGGTAT  CACGTGT   TATA AA TGGTG GA      TGTT    AGGTT 
 ||| |||||||| |||||||| |||||| || ||||||| ||||||  |||||||   |||| || ||||| ||      ||||    ||||| A
 ACC GGTACTCT TAAAAAGT ACACTG TC TGTGTTC ACCATG  GTGCACA   ATAT TT ACCAC CT      ATAA    TTCAA 
C   T        T        A      A  T       -      CA       AAA    T  C     C  -TTAAA    AAAA     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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