Plant MITE

SE3020129

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_266
Malus domestica
SE3020129
Mutator
MadM30
MDC019710.194:22278-22444
TAAGAAATA
TAGGGTAGTGCTATTCACACACCTATTTTTACCTCTCACACACCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAGAAA               -C      C         C         -     --GTTAAATTT G    --    TATTCTT
       TAGGGTAGTGCTATT  ACACAC TATTTTTAC TCTCACACA CCCTT           C GTCA  TTGA       
       |||||||||||||||  |||||| ||||||||| ||||||||| |||||           | ||||  ||||       A
       ATCCCATCACGATAG  TGTGTG ATAAAGATG AGAGTGTGT GGGAG           G CAGT  AGCT       
ATAAAGA               TT      A         A         A     AATTAAAAACT G    CT    TACTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020129

TAAGAAATAGGGTAGTGCTATTCACACACCTATTTTTACCTCTCACACACCCTTGTTAAATTTCGGTCATTGATATTCTTAAATTCATTCGATCTGACGGTCAAAAATTAAGAGGGATGTGTGAGAAGTAGAAATAAGTGTGTTTGATAGCACTACCCTAAGAAATA

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