SE3050130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_267
  • Malus domestica
  • SE3050130
  • PIF/harbinger
  • MadP7
  • MDC019943.76:16297-16535
  • TAA
  • AGGGCTTATTTGGATATGCTTTTAAAATTACTGAAAGCGTTTTTTGAGAAAATGTTTTTGGGTTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       A                    T               T A               TT   ----------------    CACTTAAAGTGCTTTTTGCAAGAAGCACCAATTTTGTGC
  AGGGCTT TTTGGATATGCTTTTAAAAT ACTGAAAGCGTTTTT G GAAAATGTTTTTGGG  CCA                AAAG                                       
  ||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||  |||                ||||                                        
  TCTTGAG AAACCTATACGAAAATTTTA TGATTTTTGTGAAAA C TTTTTACAAAAATCT  GGT                GTTC                                       
AA       C                    C               C A               -T   TAGGAATCATTTTTAC    ATTTAGGACTTTTTTGTGAATTTCACGAAGGACCTTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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