SE3020131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_268
  • Malus domestica
  • SE3020131
  • Mutator
  • MadM10
  • MDC019669.78:22887-23110
  • TAATTTGTC
  • GGACTTGGATTGTCTGCCCTCCTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTGTC                         TCCCATACTCTTCCTA           A  C                      C  C          ------GA    --      AGA
         GGACTTGGATTGTCTGCCCTCCTCA                TGCCCTCCTAT TT TGTGGTCACGGTTAAGCCACGT AA ATTTTATATT        TTTT  TTTTAT   
         |||||||||||||||||||||||||                ||||||||||| || |||||||||||||||||||||| || ||||||||||        ||||  ||||||   A
         CCTGAACCTAACAGATGGGAGGGGT                ACGGGAGGATA AA ACACCAGTGCTAATTCGGTGCA TT TAAAATATAA        AAAA  AGAATA   
CTGTTTAAT                         ----------------           -  A                      A  A          AGGTAATG    AC      ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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