Plant MITE

SE3020134

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_271
Malus domestica
SE3020134
Mutator
MadM4
MDC000868.280:20324-20500
TTTTATTTA
AAGAGTAATGTTAGAGAGACTAAATTTGCAAACTAAATAATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTATTT          T               --------------  C         A     TCACCAATAG   A    --CAC     TCAA
        AAGAGTAATG TAGAGAGACTAAATT              TG AAACTAAAT ATGTG          GAT TGAG     ATTTA    
        |||||||||| |||||||||||||||              || ||||||||| |||||          ||| ||||     |||||     
        TTCTCATTAC ATCTCTCTGATTTAA              AC TTTGATTTA TGTAC          CTA ACTT     TGAAT    
 AATTTAT          T               ATATCTAATTTAAA  A         C     -TTTCAACTA   -    AATAA     TTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020134

TTTTATTTAAGAGTAATGTTAGAGAGACTAAATTTGCAAACTAAATAATGTGTCACCAATAGGATATGAGCACATTTATCAATATTTAAGTAATAATTCAATCATCAACTTTCATGTCATTTAGTTTACAAAATTTAATCTATAAATTTAGTCTCTCTATCATTACTCTTTATTTAA

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