SE3020142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_279
  • Malus domestica
  • SE3020142
  • Mutator
  • MadM5
  • MDC011938.114:26045-26232
  • CTAATTTAG
  • CTAATTTAGGAGAGATTTTTCAGTGTGAC

Secondary structure and sequence

TSD    TIR
5'



3'
    T               C   -     CGTCACACG             C    CC    A   A       TT  GTGT   AAA     A
CTAA TTAGGAGAGATTTTT AGT GTGAC         AGATGGTACACCA GTGT  TTAT TAA TGGTGGA  AT    GTT   AGGTT 
|||| ||||||||||||||| ||| |||||         ||||||||||||| ||||  |||| ||| |||||||  ||    |||   ||||| A
GATT AATCCTCTTTAAAAA TCA CACTG         TCTACCATGTGGT CACA  AATA GTT ACTACCT  TA    TAA   TTCAA 
    T               -   A     -CCCTTATA             T    AA    C   C       TT  AAAT   AAA     T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End