SE3020144

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_281
  • Malus domestica
  • SE3020144
  • Mutator
  • MadM12
  • MDC006222.243:31411-31631
  • TCTAATCTT
  • GGAAAAGGATGGCGATGATCATTTTCTTAGGGATTCAYTGATCTCACTTGTTCATCGTATATCGTGCGGTCAGTTTTTATTAGATATTATTTATATTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTAATCTT         --- G    T    A               AY        C                          TTT     AGA  TT     -T     AT
         GGAAAAGGA   T GCGA GATC TTTTCTTAGGGATTC  TGATCTCA TTGTTCATCGTATATCGTGCGGTCAG   TTATT   TA  ATTTA  ATTTA  
         |||||||||   | |||| |||| |||||||||||||||  |||||||| ||||||||||||||||||||||||||   |||||   ||  |||||  |||||   
         CCTTTTCCT   A CGTT CTAG AAAAGGATCCCTAGG  ACTAGAGT GGCAAGTAGCATGTAGCACGCCAGTC   AGTAA   AT  TAAAT  TAAAT  
CTCTAATCT         AGG G    -    G               GC        A                          TTT     --A  TT     TT     TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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