Plant MITE

SE3020151

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_288
Malus domestica
SE3020151
Mutator
MadM8
MDC012592.389:23311-23485
AAAAATAAG
GAGTAATGCTAGGTAGACTAAATTTGTAAACTAAAT

Secondary structure and sequence

TSD TIR

5'

3'

 AAAAATAA A       T   T   C     T      C     -------------------    TGTCACCAATAAGGAATAAACACGTTAAT
         G GTAATGC AGG AGA TAAAT TGTAAA TAAAT                   AATG                             
         | ||||||| ||| ||| ||||| |||||| |||||                   ||||                             C
         C CATTATG TCC TTT ATTTA ACATTT ATTTA                   CCTT                             
AATAAAAAA C       C   C   A     C      A     AAACATTTAATTTACTATA    CAACTACTAATTTAATAAGGAATTCACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020151

AAAAATAAGAGTAATGCTAGGTAGACTAAATTTGTAAACTAAATAATGTGTCACCAATAAGGAATAAACACGTTAATCAACACTTAAGGAATAATTTAATCATCAACTTCCATATCATTTAATTTACAAAATTTAATTTACACATTTAATTTCCCTCGTATTACCCAAAAAATAA

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