SE3050153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_290
  • Malus domestica
  • SE3050153
  • PIF/harbinger
  • MadP10
  • MDC018245.149:6463-6844
  • TTA
  • AGAGCATCTCCAAAGGARATGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      T          R        TTTTAAACAT      ------- ATAGTY  TAGCTTATGTGGCAATTTGACATTTTGTACAATATTTTGCTCCACCCGATATGTTAAATAATAATGTCATTTAATAAATTTTTTATCTTTTTGTGGAGTCCAATGATTAAGGCAACCAATCAAATATTTCAAAAACATAAC
  AGAGCA CTCCAAAGGA ATGTCAAA          CAAAAT       G      GA                                                                                                                                             
  |||||| |||||||||| ||||||||          ||||||       |      ||                                                                                                                                             A
  TCTCGT GAGGTTTCCT TACAGTTT          ACGGTG       A      TG                                                                                                                                             
AT      C          A        --------TA      CATCTGT ------  TTGTCATTTTTTACCGTCGTTTGAGAGAGGTTGGCTCGGAAGTTAAAGAATGCACCACGACTCAGTAAACTTCCGTTTCAGAAATCGACAGTTTAAGTAATTTACTAAAAAATTATCTAATTATATTATATATTATTTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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