SE3020154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_291
  • Malus domestica
  • SE3020154
  • Mutator
  • MadM25
  • MDC012273.471:272-443
  • TAAAAAAAA
  • AGGGAACTTTAACGAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAAAA      CT    C      CACCC   AC  TTC     AACGAAA   C   TTTTT   CT A    TCAATCC   TAC
         AGGGAA  TTAA GAAAAG     GGT  TG   ACTTT       AAT ATA     ACA  A AAAG       TGA   
         ||||||  |||| ||||||     |||  ||   |||||       ||| |||     |||  | ||||       |||    
         TCCTTT  GATT CTTTTC     CCA  AC   TGAAA       TTA TAT     TGT  T TTTC       ACT   
 AAAAAAAA      -T    A      -----   -A  TTT     CTCAAAA   C   --TCC   TT A    CCATTTC   TAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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