SE3020158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_295
  • Malus domestica
  • SE3020158
  • Mutator
  • MadM14
  • MDC002285.478:38091-38588
  • TTCCTTTAA
  • AAGAGAAAATTATAGTAATGATCACTCAACTTTAACCTAATTGGAGTAATGATCACTCAACTAAAATTCATAACCATTGGTCCTTTAACTCTTCAAAACGTGCAGCTATTGTTATTTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTCCTTT          TA        A  AC                 G           A  C        -     A  C               CT     A           T         ATRAAC  C    G  CTTCCA       G             ACACGTGATGTTGAATCAAGGGGCAAATATGAAAAACAAAATGAGAAAAATGGTAACAATGGTCCCCCACTTTAACTCAA
       AAGAGAAAAT  TAGTAATG TC  TCAACTTTAACCTAATT GAGTAATGATC CT AACTAAAA TTCAT AC ATTGGTCCTTTAACT  TCAAA CGTGCAGCTAT GTTATTTTC      TC GTTA AA      TCAAAAT AGTCATGTGTCAT                                                                                
       ||||||||||  |||||||| ||  ||||||||||||||||| ||||||||||| || |||||||| ||||| || |||||||||||||||  ||||| ||||||||||| |||||||||      || |||| ||      ||||||| |||||||||||||                                                                                T
       TTCTCTTTTA  ATTGTTAC AG  AGTTGAAATTGGATTAA CTCGTTACTAG GA TTGATTTT AAGTA TG TAACCAGGGAGTTGA  AGTTT GCACGTTGATA CAGTAAAAG      AG CAGT TT      AGTTTTA TCAGTACAACCTT                                                                                
AATTTCC          CC        C  GA                 A           A  A        T     C  A               AT     -           T         CAGTTA  T    G  -AAAAC       G             CCTGTTAACGATGTTAATCCAATTTCAACTCCCTAATAACGAGGTTTACCCAATTTCAATTAACTCCCTGGTAAAAACGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End