Plant MITE

SE3030161

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_298
Malus domestica
SE3030161
hAT
Madh8
MDC021332.247:476-1089
ATGTCCAT
ATGTCCATCAGTGGCGGATCCA

Secondary structure and sequence

TSD TIR

5'

3'

   TC      T          GGAAATAATGT   A         AAAGATAAC    AGCGCGCAAATTTTTTTTAACAGAAACGACATGCATATCGTCATTTCATCGAGTCTTGGTAGGATAGCGTGACCAGCTACTCCAAAATCCTTGTTCAAAGGTCCTAAACGTTCAAACCTGGAGGAAGAGATTGCTTCAACTTGTCGGCCTTCTCGGAATCAAACACACAAAGTGTGTAAAGGTACTTGGAGCACCGAACCTTGAACTTGACAGCATCCTTGGTCCTCTTGATTTTGACATTGCGAGCATCCTTCCTTC
ATG  CATCAG GGCGGATCCA           TAG GGGGTCAAT         GCGC                                                                                                                                                                                                                                                                  
|||  |||||| ||||||||||           ||| |||||||||         ||||                                                                                                                                                                                                                                                                   
TAC  GTAGTC CCGCCTAGGT           GTC CCCCAGTTA         CCCC                                                                                                                                                                                                                                                                  
   CT      C          -----------   A         ---------    AGTGTGCTGGGGAACCTTCGGTACCTTTATTGGAACCTCGACGACCACGCTGGAGAACCTCGACGTGTGGTGCACCAGCTGCTTTACAGACTTCCTTCTTCTTTCTCAAGCGAACGTCCAACTTCTTCTTCCTCCGACGACCGCGCAACTATCGGAGGAGCCTGAAACTCTCTCTTGAGCGTCGGAGGCCAGAGCTGGCTCGTTGTTCGTTTTACGGCTTCGTRTAGGTACTCTAGTTCCTAAAGGAAGATTGACGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030161

ATGTCCATCAGTGGCGGATCCAGGAAATAATGTTAGAGGGGTCAATAAAGATAACGCGCAGCGCGCAAATTTTTTTTAACAGAAACGACATGCATATCGTCATTTCATCGAGTCTTGGTAGGATAGCGTGACCAGCTACTCCAAAATCCTTGTTCAAAGGTCCTAAACGTTCAAACCTGGAGGAAGAGATTGCTTCAACTTGTCGGCCTTCTCGGAATCAAACACACAAAGTGTGTAAAGGTACTTGGAGCACCGAACCTTGAACTTGACAGCATCCTTGGTCCTCTTGATTTTGACATTGCGAGCATCCTTCCTTCTTGCAGTTAGAAGGAAATCCTTGATCTCATGGATRTGCTTCGGCATTTTGCTTGTTGCTCGGTCGAGACCGGAGGCTGCGAGTTCTCTCTCAAAGTCCGAGGAGGCTATCAACGCGCCAGCAGCCTCCTTCTTCTTCAACCTGCAAGCGAACTCTTTCTTCTTCCTTCAGACATTTCGTCGACCACGTGGTGTGCAGCTCCAAGAGGTCGCACCAGCAGCTCCAAGGTTATTTCCATGGCTTCCAAGGGGTCGTGTGACCCCATTGACCCCACTGTGGATCCGCCCCTGATGTCCAT

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