Plant MITE

SE3020162

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_299
Malus domestica
SE3020162
Mutator
MadM41
MDC011650.673:25263-25488
TAAAAGTTT
AAAGTTTGGATTTGTATCCTCTCATGAGCCCAAGAAGAGAATCCTCCTGACCAAGGAGTGT

Secondary structure and sequence

TSD TIR

5'

3'

TA   G   --       TAT      A          A    A          C          AAGGAGTGTT                  C       ACAAACA    GATCCTTTAT
  AAA TTT  GGATTTG   CCTCTC TGAGCCCAAG AGAG ATCCTCCTGA CAAGGAGTGT          GGCTGTTGGATTTTTATC AACGGCT       GAAG          
  ||| |||  |||||||   |||||| |||||||||| |||| |||||||||| ||||||||||          |||||||||||||||||| |||||||       ||||          A
  TTT AAA  CCTAAAC   GGAGAG ACTCGGGTTT TCTC TAGGAGGACT GTTCTTCACA          CCGGCAACCTAAAAGTAG TTGCTGA       TATT          
 G   G   AT       CTT      G          C    C          A          ---------C                  A       -------    AATAATATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020162

TAAAAGTTTGGATTTGTATCCTCTCATGAGCCCAAGAAGAGAATCCTCCTGACCAAGGAGTGTAAGGAGTGTTGGCTGTTGGATTTTTATCCAACGGCTACAAACAGAAGGATCCTTTATAGTTATAATAATTATAGTCGTTAGATGAAAATCCAACGGCCCACACTTCTTGATCAGGAGGATCCTCTCTTTGGGCTCAGGAGAGGTTCCAAATCCTAAAAGTTTG

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