Plant MITE

SE3020166

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_303
Malus domestica
SE3020166
Mutator
MadM36
MDC003668.619:5881-6068
TAAATTTGG
TAAATTTGGGAGTAATGCTATGAAGACTAAATTTGGAGACTAAAATTGCAAACGAAATGATGTGT

Secondary structure and sequence

TSD TIR

5'

3'

          G          T A       A        C    -A   C    G      T    CACTAATACAA    GCAC      CAYCAC
 TAAATTTGG AGTAATGCTA G AGACTAA TTTGGAGA TAAA  TTG AAAC AAATGA GTGT           ATGA    GTTTAT      
 ||||||||| |||||||||| | ||||||| |||||||| ||||  ||| |||| |||||| ||||           ||||    ||||||      T
 GTTTAAATC TCATTACGAT C TTTGATT AAACCTCT ATTT  AAC TTTG TTTACT TACA           TACT    TAAATA      
G         -          C C       C        Y    AA   T    A      Y    -----TTCAAC    -AAC      ATGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020166

TAAATTTGGGAGTAATGCTATGAAGACTAAATTTGGAGACTAAAATTGCAAACGAAATGATGTGTCACTAATACAAATGAGCACGTTTATCAYCACTTAAGTAATAAATCAATCATCAACTTACATYTCATTTAGTTTTCAAAATTTAYTCTCCAAACTTAGTTTCCCTAGCATTACTCTAAATTTGG

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