SE3020167

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_304
  • Malus domestica
  • SE3020167
  • Mutator
  • MadM4
  • MDC002226.368:1565-1739
  • TATTTAAAA
  • TTTAAAAGAGTAATGCTAGGGAGACTAAATTTTGGAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      -  A                       T      TAAAG      G   --- T   --  TTGATTTATTACTTAAGCGTTGATA
  TTTAAA AG GTAATGCTAGGGAGACTAAATTT GGAAAC     GACATT AAG   T AAT  AA                         
  |||||| || ||||||||||||||||||||||| ||||||     |||||| |||   | |||  ||                         A
  AAATTT TC CATTATGATCCTTCTGATTTAAA CCTTTG     TTGTAA CGT   A TTT  TA                         
 A      A  C                       -      -----      A   TTG -   AT  CACAGTGGTTATCCTTACTTGTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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