SE3050169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_306
  • Malus domestica
  • SE3050169
  • PIF/harbinger
  • MadP12
  • MDC005244.615:11205-11423
  • TTA
  • AGGGCTAATTTGGAAGTACTTTTAAAACGACTGAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      A              T     C        C    - TGTTAAAATTGATATTGGGTTCCAAAAGCACTTTAAGTACTTTTTGGAAGAATCATCAGATGTGT
  AGGGCT ATTTGGAAGTACTT TAAAA GACTGAAG GTTT T                                                                 
  |||||| |||||||||||||| ||||| |||||||| |||| |                                                                  
  TCCCGA TAAACCTTTATGAA ATTTT TTGATTTT ACTA A                                                                 
AT      G              C     A        C    A ACCACTTTTATAAAAACTTTGATTAAGAATCATTTCAAGTTCACCTAGGATAGGAACATTCTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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