SE3030171

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_308
  • Malus domestica
  • SE3030171
  • hAT
  • Madh9
  • MDC007995.572:1436-2111
  • TCCTAGCC
  • CCTGTAGGCACTGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TCCTAG          C      -----------    ATA  --   ACTAGAGTAGTCCTAGGCCTACCCTCACTTGTAAAAATAATTACACCTTACTTTGCAACCCTTCTCAACACATGAAACAAATCCAATCATTGTCTATTTTTAATCTAACAAATTTCATCCCAAAATTAAGTATAATATTTTGAATCGTCATTTATCACAAATCAATAACATTCAAATTAAACTCATCATTCACTTTTAATTAACAAAAATTGTTTTTCACTTATGCACTGTCAGAGCTATTTCCCTATTCTTCTTGAATTTCATATATTTAACCATTTCAAATTCCAAATTTATTGAATAA
      CCTGTAGGCA TGGCGG           AGGC   TT  AGG                                                                                                                                                                                                                                                                                                             
      |||||||||| ||||||           ||||   ||  |||                                                                                                                                                                                                                                                                                                              
      GGATGTCCGT ACCGCC           GAAC   AC  CTC                                                                                                                                                                                                                                                                                                             
                C      TCGATCCTAAA    ---  TC   CCCGGAGTGTGTTCATGTCTTCTTCTTTTTTACTTATCACTAATATTTTAATGTTTACGTTTTGTAGTATTATATATAGGTTTATTAATTTATCAGTTTTAATTGTATAGGTATCTATTATATTTAAAGTATAAAACTTTGGTAACGCGTACTACAGTAGATATGATAACTTTCTTAATAATTTGAGTTATCTCTCTTAATGATTTTTAAACGTTTGGGATTTTGAGTTTCATTCTCCATCCTATATTATCTTGGTTTACAAAATATCTCCTATTATCTCAAAATGTTTGGAATAACAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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