SE3020172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_309
  • Malus domestica
  • SE3020172
  • Mutator
  • MadM41
  • MDC003311.326:856-1070
  • CCGCACTAA
  • GGATTTGGATCCTCTCCGGAGCTTAAGGAGAGGATCCTCCTGACCAACACACTTGGACCGTTGGATAAAAATTCAACGGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCGCACTAA                 G       A  A   G      C           CT             -AAA          C     TTATTATAACTTTAAA   AT
         GGATTTGGATCCTCTCC GAGCTTA GG GAG ATCCTC TGACCAACACA  TGGACCGTTGGAT    AATTCAACGG TATAA                AGG  
         ||||||||||||||||| ||||||| || ||| |||||| |||||||||||  |||||||||||||    |||||||||| |||||                |||   
         CCTAAACCTAGGAGAGG CTCGAAT CC CTC TAGGAG ACTGGTTGTGT  ACCTGGCAACCTA    TTAGGTTGCC ATGTT                TCC  
AATCACGCC                 A       A  R   -      -           AC             AAAG          A     --------------TG   CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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