Plant MITE

SE3020173

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_310
Malus domestica
SE3020173
Mutator
MadM5
MDC016651.37:1021-1208
CTTAACATG
GGAGAGATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

CTTAACAT            TAGT     C  C    AA                 CAC   A   A        TATGTG    -AAA     A
        GGAGAGATTTTT    GTGAC GG ACAC  GATGGTACACCACGTGT   TAT TAA TGGTGGGA      TGTT    AAGTT 
        ||||||||||||    ||||| || ||||  |||||||||||||||||   ||| ||| ||||||||      ||||    ||||| A
        CCTCTTTAAAAA    CACTG CC TGTG  CTACCATGTGGTGCACA   ATA ATT ACCACCTT      ATAA    TTCAA 
GTACAATT            CTAC     C  T    -C                 AAA   C   C        -TTAAA    AAAA     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020173

CTTAACATGGAGAGATTTTTTAGTGTGACCGGCACACAAGATGGTACACCACGTGTCACTATATAAATGGTGGGATATGTGTGTTAAAAAGTTAATAACTTAAAAAATAAAATTTTCCACCACTTACATAAAAACACGTGGTGTACCATCCGTGTTCCCGTCACCATCAAAAATTTCTCCTTAACATG

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