Plant MITE

SE3020176

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_313
Malus domestica
SE3020176
Mutator
MadM31
MDC036375.12:3795-4035
ATTTTAGTA
GAATGAGAATCCTCTCCAGATCCTCTTTGTGAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTAGTA       A  C     CA                  CCCA   -     C              C  C            AT    TTTCGTCAAGTACTGTTCATTTTTTAT
         GAATGAG AT CTCTC  GATCCTCTTTGTGAGGAT    GGA ATTCT AAATTGTGTTCGTT AT GTACATCGTGCG  CAGT                           
         ||||||| || |||||  ||||||||||||||||||    ||| ||||| |||||||||||||| || ||||||||||||  ||||                            
         CTTACTC TA GAGAG  CTAGGAGAAACACTCCTA    CCT TAGGA TTTAGCACAAGCAA TA CATGTAGCACGT  AGTA                           
ATGATTTTA       C  A     AA                  -AGA   C     A              A  A            -C    TTTAATAAAATTTATGAAAACAAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020176

ATTTTAGTAGAATGAGAATCCTCTCCAGATCCTCTTTGTGAGGATCCCAGGAATTCTCAAATTGTGTTCGTTCATCGTACATCGTGCGATCAGTTTTCGTCAAGTACTGTTCATTTTTTATTTTAAACAAAAGTATTTAAAATAATTTATGACTGCACGATGTACAATAAACGAACACGATTTAAGGATCTCCAGAATCCTCACAAAGAGGATCAAGAGAGAATCCTCATTCATTTTAGTA

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