SE3020179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_316
  • Malus domestica
  • SE3020179
  • Mutator
  • MadM8
  • MDC015291.258:29888-30063
  • TTCATCTAA
  • AAGGGTAATGCTAAGGAGACCAAATTTCTAAACCAAATAATGTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTCATCT             A     C    T  C      A   AA      CGTT     -  G     T ACTTAAGTGTTGATTAA
        AAGGGTAATGCTA GGAGA CAAA TT TAAACC AAT  TGTAGA    GATGA GT GATTA T                 
        ||||||||||||| ||||| |||| || |||||| |||  ||||||    ||||| || ||||| |                  
        TTCCCATTACGAT CCTCT GTTT AA ATTTGG TTA  ACGTTT    TTACT CA CAATG G                 
TAACCTAC             C     A    T  A      A   -A      -AGT     A  -     - TTATCTTTTATTCGTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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