SE3050182

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_319
  • Malus domestica
  • SE3050182
  • PIF/harbinger
  • MadP12
  • MDC000946.217:10812-11033
  • TAA
  • AGTGCTCGTTTGGAAGTGCTTTTAAAATGACCGAAAGTGCTTTTGGTGAAATGTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  T                     A      C   A        G        -T     ---AAA   ATC      AAAAAACTAAGTGGATCCTGTAGAACCACTAAGTG
  AG GCTCGTTTGGAAGTGCTTTTA AATGAC GAA GTGCTTTT GTGAAATG  TTTTG      CCA   CTTAGT                                   
  || ||||||||||||||||||||| |||||| ||| |||||||| ||||||||  |||||      |||   ||||||                                    
  TC CGAGCAAACCTTCACGAAAAT TTACTG CTT CGCGAAAA CACTTTAT  AAAAC      TTT   TCGTGA                                   
AA  C                     C      A   -        G        CT     CCAAAG   ---      AATTCACGAAAAAACTTCTTCGTGTTACGTCCTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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