SE3020184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_321
  • Malus domestica
  • SE3020184
  • Mutator
  • MadM41
  • MDC015544.205:1204-1419
  • CACTTCCAA
  • GGACCAGGATCCTCTCCTGAGCTAAGCATGAGGATCCTCCTCATCAAGGGGTGTGGGCCGTTAGATGAAAATCCAACGGCTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CACTTCCAA                          C    G                              A                      TTATTATAA   GA
         GGACCAGGATCCTCTCCTGAGCTAAG ATGA GATCCTCCTCATCAAGGGGTGTGGGCCGTT GATGAAAATCCAACGGCTACAA         CTT  
         |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||         |||   
         CCTGGTCCTAGGAGAGGACTCGATTC TACT CTAGGAGGAGTAGTTCCCCACACCCGGCAA CTACTTTTAGGTTGCCGATGTT         GGA  
AACCTTCAC                          C    M                              C                      TGTCCCCCA   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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