SE3020188

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_325
  • Malus domestica
  • SE3020188
  • Mutator
  • MadM30
  • MDC019710.194:22278-22444
  • TATTTCTTA
  • TAGGGTAGTGCTATCAAACACACTTATTTCTACTTCTCACACATCCCTCTTAATTTTTGACCGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTCT              CAA            C                CTC    T     ACC    GATCGAATGAAT
       TAGGGTAGTGCTAT   ACACACTTATTT TACTTCTCACACATCC   TTAA TTTTG   GTCA            
       ||||||||||||||   |||||||||||| ||||||||||||||||   |||| |||||   ||||            T
       ATCCCATCACGATA   TGTGTGGATAAA ATGGAGAGTGTGTGGG   AATT AAAGC   CAGT            
ATTCTTT              -AG            A                AAC    T     ---    AACTATAAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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