SE3020190

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_327
  • Malus domestica
  • SE3020190
  • Mutator
  • MadM54
  • MDC016712.235:11181-11393
  • ATATAAATG
  • GGAAAGGGATCCTCTCCGGATCCCTTCCTCCTAATCCACCAAGTCCGGGGATCCAAGCTATTGAAATTTGATTCAACYGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATAAATG           C   C                      C     C         A    A            TC   Y    C    GCCTACTTTAA
         GGAAAGGGATC TCT CGGATCCCTTCCTCCTAATCCA CAAGT CGGGGATCC AGCT TTGAAATTTGAT  AAC GCTA AAGG           
         ||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||  ||| |||| ||||            
         CCTTTCCCTAG AGA GTCTAGGGAAGGAGGATTAGGT GTTCA GCCCCTAGG TCGA AACTTTAAACTA  TTG CGAT TTCA           
GTAAATATA           T   A                      A     A         C    C            YA   C    -    ATAATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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