SE3020193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_330
  • Malus domestica
  • SE3020193
  • Mutator
  • MadM20
  • MDC018651.212:20913-21129
  • ATTAAATTA
  • GGATTTGGATCCTCTTCGAGGCAATTGGTCGGGATCCTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAAATTA                C                        YACR             CA   A    T    C  C     CAATTATTATAACTTTT G   GC
         GGATTTGGATCCTCTT GAGGCAATTGGTCGGGATCCTCCT    GGTGTTTGTGGGC  TTG ATTT TATC AA GGCTA                 A AGG  
         |||||||||||||||| ||||||||||||||||||||||||    |||||||||||||  ||| |||| |||| || |||||                 | |||  C
         CCTAAACCTAGGAGAG CTCCGTTAACCAGCCCTAGGAGGA    CCACAGACACCCG  AAT TAAA ATAG TT CCGAT                 T TCC  
ATTAAATTA                A                        CTAG             YC   C    Y    T  A     --------------YTT G   TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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