SE3020197

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_334
  • Malus domestica
  • SE3020197
  • Mutator
  • MadM9
  • MDC022624.120:12558-12791
  • ATTAATACG
  • ATTAATACGAATGAAAATCCTCTCCGGATCCTATTTGTGAGGATCCCGGATTCAATCACATCTGTTCATTGTACATCGTGCGGTCAGAAATCATTATAATTTTTTTATTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
        AC      AA       C      CTA              --      ---      ATC                         AAA  A   -TA   -   T      AA
  ATTAAT  GAATGA  ATCCTCT CGGATC   TTTGTGAGGATCCC  GGATTC   AATCAC   TGTTCATTGTACATCGTGCGGTCAG   TC TTA   ATT TTT TATTTA  
  ||||||  ||||||  ||||||| ||||||   ||||||||||||||  ||||||   ||||||   |||||||||||||||||||||||||   || |||   ||| ||| ||||||   
  TAATTA  CTTACT  TAGGAGA GCCTAG   AAACACTCCTAGGG  CCTAGG   TTAGTG   ACAAGTAGTATGTAGCACGTCAGTC   AG AGT   TGA AAA ATAAGT  
CA      -A      CC       A      AAG              CC      AGA      CAA                         AAA  C   CTA   C   T      TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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