SE3020199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_336
  • Malus domestica
  • SE3020199
  • Mutator
  • MadM41
  • MDC023569.114:2439-2654
  • CTGTAAAAG
  • AGGGACTTGGATCCTCTCCTAAGCTCAAGAAGAGGATCCTCTTGACCAAAGGACTTGGGCCGTTAGATGAAAATCCAACG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTGTAAA                    A        A  A       C                       A          C    GCTACAAAC    AGTCCCTTTAAA
       AGGGACTTGGATCCTCTCCT AGCTCAAG AG GGATCCT TTGACCAAAGGACTTGGGCCGTT GATGAAAATC AACG         AAGG            
       |||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||| |||||||||| ||||         ||||            G
       TCCCTGAACCTAGGAGAGGA TCGGGTTC TC CCTAGGA GACTGGTTTCCTGAATCCGGCAA CTACTTTTAG TTGC         CAAT            
GAAAATG                    C        A  C       A                       C          A    ---------    ATTAATAATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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