SE3030201

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_338
  • Malus domestica
  • SE3030201
  • hAT
  • Madh2
  • MDC018631.176:230-426
  • GTTATAGC
  • GTTATAGCTAGAGGTGGCAAATCAACTCATTAGATTGTTAATGGGTACCCGTTAAGACCCATTTAGTTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                      C        -  A                          AT  A      TTTTACTT        CATCATCACTACCAA
GTTATAGCTAGAGGTGGCAAAT AACTCATT AG TTGTTAATGGGTACCCGTTAAGACCC  TT GTTTGA        TACACCAT               
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||  || ||||||        ||||||||               A
CGATATTGATCTCCACTGTTTA TTGAGTAA TC AACAATTACCCATGGGCAATTTTGGG  AA TAAACT        ATGTGGTA               
                      A        C  -                          CT  C      --------        TTATATCTCCGCTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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