SE3020203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_340
  • Malus domestica
  • SE3020203
  • Mutator
  • MadM14
  • MDC009011.384:7140-7624
  • TACTTATAA
  • AGAGTAAATTGTAGCAATGGTCCCTCAACTTTAATCAAATTGGAGTAATGGTCCCTCAACTAAAAATCCATTACTATTAGTCCCTCAACTTATCAATATGTGTAGCTATAGTCATTTTCATC

Secondary structure and sequence

TSD    TIR
5'



3'
TACTTATA               A         C         CA         A                         A     A      C          T            A   AT     T -----------A      T  A     TGTCAAAATAAGTTATGTTGGAATAACCATTTATATAATTAGGGTCCCTCAACTCATCAAAGTGTGTAATTATGGTCATTTTCGTCAACTACG
        AGAGTAAATTGTAGC ATGGTCCCT AACTTTAAT  AATTGGAGT ATGGTCCCTCAACTAAAAATCCATT CTATT GTCCCT AACTTATCAA ATGTGTAGCTAT GTC  TTTCA C            ATTTCG CA AATTT                                                                                             
        ||||||||||||||| ||||||||| |||||||||  ||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||| |||  ||||| |            |||||| || |||||                                                                                              
        TCTCATTTAACATCG TACCAGGGA TTGAAATTG  TTAACCTCG TACCAGGGAGTTGATTTTTAGGTAA GGTAA CAGGGA TTGAGTAGTT TGCACGTCGATA CAG  GGAGT G            TGGTAA CC AGGGA                                                                                             
AATATTCA               A         A         AG         A                         C     C      C          T            C   --     T ATTTTTAGGTAA      -  -     GTTGAAATTAAGTTGATCTCTTTACTAGGGAATTGAAATTGGGTTAACATCGTTACCAGTAAGGTTGTATTGAGCAAAACTGTTTTAAAAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End