SE3020204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_341
  • Malus domestica
  • SE3020204
  • Mutator
  • MadM14
  • MDC000045.375:4694-5176
  • TATCGAGAG
  • TCGAGAGAGTAAATTGTAGCAATAATTCCTCTACTTTAATCAAATTGGAGCAATGGTCCCTCAACTAAAAATCCATTACCATTGGTCCCTCAATTTATCAAAATGTGTAGCTATAGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TA    -                A  A      CT        CA           T             A                                              A   --     ---  TCAATTTCGTCAAAATTTTGTGAAAATAAGTTATGTTGGAATAACCATTTATATAATTAGGATCTCTCAACTCATCAAAGTGTGTAATTATGGTCATTTTCGTCAACTACGT
  TCGA GAGAGTAAATTGTAGC AT ATTCCT  ACTTTAAT  AATTGGAGCAA GGTCCCTCAACTA AAATCCATTACCATTGGTCCCTCAATTTATCAAAATGTGTAGCTAT GTC  ATTTT   CA                                                                                                                
  |||| |||||||||||||||| || ||||||  ||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||  |||||   ||                                                                                                                 
  AGCT TTCTCATTTAACATCG TA TAGGGA  TGAAATTG  TTAACCTCGTT CCAGGGAGTTGAT TTTAGGTAATGGTAACCAGGGAGTTGAGTAGTTTTGCACGTCGATA CAG  AGTTG   TT                                                                                                                
 G    A                A  C      AT        AG           T             G                                              C   GG     ATT  TAGATAATGGTAACTAGGGAGTTGAAATTAAGTTGACCTCTTTACTAGGGAATTGAAATTGGATTAACATCGTTACCAGGAAGGTTGTATTGAGWAAAACTGTTTTAAAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End