SE3020205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_342
  • Malus domestica
  • SE3020205
  • Mutator
  • MadM14
  • MDC020959.82:26082-26566
  • AAAAAAATA
  • GAGTAAATTGTAGCAATGGTCCCTCAACTTTAATTAAATTGGAGCAATGATCCCTCAACTAAAAATCCATTACCATTAGTCCCTCAACTTATCAAAATGTGTAGCTATAGTTATTTTCATC

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAAATA              A      C  C          A    G      -  A  C              C         A        A                     A   AT     T -----------------A      T   AATTTTGTCAAAATAAGTTATGTTGGAATAACCATTTATATAATTAGGATCCCTCAACTCATCAAAGTGTGTAATTGTGGTCATTTTCGTAAAT
         GAGTAAATTGTAGC ATGGTC CT AACTTTAATT AATT GAGCAA TG TC CTCAACTAAAAATC ATTACCATT GTCCCTCA CTTATCAAAATGTGTAGCTAT GTT  TTTCA C                  ATTTTG CAA                                                                                              
         |||||||||||||| |||||| || |||||||||| |||| |||||| || || |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||  ||||| |                  |||||| |||                                                                                              T
         CTCATTTAACATTG TACCAG GA TTGAAATTAA TTAA CTCGTT AC AG GAGTTGATTTTTAG TAATGGTAA CAGGGAGT GAGTAGTTTTGCACGTCGATA CAG  GGAGT G                  CCAGGG AGT                                                                                              
ATAAAAAAA              A      A  A          G    A      T  -  A              T         C        G                     C   --     T ATTTTTAAGTAATGGTAA      -   TGAAATTAAGTTGACCTCTTTATTAGAGAATTGAAATTGGGTTAACATCGTTACCAGGAAGGTTGTATTGAGCAAAACTGTTTTAAAAACTGCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End