Plant MITE

SE3020207

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_344
Malus domestica
SE3020207
Mutator
MadM55
MDC037826.18:29876-30095
GTGTATGCA
GTGTATGCATGGACCAGGATCCTCTCCTGAGCAGATGGAAAGGATCCTCCTGACCAAACCTATCGGACCGTTCATTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

             C                 C       A      C         AA                      ATCAAACAGTTACAAAC   GGACCCTTCTAAAAGTT
GTGTATGCATGGA CAGGATCCTCTCCTGAG AGATGGA AGGATC TCCTGACCA  CCTATCGGACCGTTCATTTTTT                 AGG                 
||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||  ||||||||||||||||||||||                 |||                 A
TACGTATGTGCCT GTCCTAGGAGAGGACTC TCTACCT TCCTAG AGGACTGGT  GGATAGCTTGGCAAGTAAAAAA                 AGG                 
             A                 A       C      A         CC                      ---------------AT   TTGCTAATATTAATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020207

GTGTATGCATGGACCAGGATCCTCTCCTGAGCAGATGGAAAGGATCCTCCTGACCAAACCTATCGGACCGTTCATTTTTTATCAAACAGTTACAAACAGGGGACCCTTCTAAAAGTTATAATAATTATAATCGTTGGATAAAAAAATGAACGGTTCGATAGGCCTGGTCAGGAAGATCCTCTCCATCTACTCAGGAGAGGATCCTGATCCGTGTATGCAT

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