Plant MITE

SE3020208

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_345
Malus domestica
SE3020208
Mutator
MadM43
MDC012535.399:3713-3952
TTTCATTAT
GGAGGTGGATTGTRTGTCATTCTATTTCTATARTCTTCTCATCCTCTCATGTTTYTGTGGTCATGATTAAGRRACGTCAATATTTTATATTCTTATTACTTTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

TTTCATTAT             R    A   -          R         C     A   -TTY          A     RR              T   CTT   AC       TTTATT
         GGAGGTGGATTGT TGTC TTC TATTTCTATA TCTTCTCAT CTCTC TGT    TGTGGTCATG TTAAG  ACGTCAATATTTTA ATT   ATT  TTTTTGT      
         ||||||||||||| |||| ||| |||||||||| ||||||||| ||||| |||    |||||||||| |||||  |||||||||||||| |||   |||  |||||||       
         CCTCCACCTAACA ATGG GAG GTAAAGGTAT AGAAGGGTA GGGAG ACA    ACATCAGTGC AATTT  TGCAGTTGTAAAAT TAA   TAA  AAAAATA      
TATTACTTT             G    -   T          G         C     G   CTAC          C     YG              T   --T   -A       TCTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020208

TTTCATTATGGAGGTGGATTGTRTGTCATTCTATTTCTATARTCTTCTCATCCTCTCATGTTTYTGTGGTCATGATTAAGRRACGTCAATATTTTATATTCTTATTACTTTTTGTTTTATTATTTCTATAAAAAAAATTAATTTAAAATGTTGACGTGYTTTAACCGTGACTACACATCACAGGAGGGCATGGGAAGAGTATGGAAATGTGAGGGTAGACAATCCACCTCCTTTCATTAT

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