SE3020211

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_348
  • Malus domestica
  • SE3020211
  • Mutator
  • MadM56
  • MDC023883.69:3428-3614
  • ATTTTATAA
  • GAGTAATGTTAGAGAGATCAAATTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTATAA            A     C      --A  AACTAAC    C   C    TKATRTATCACCAATAAAAATAAGCAC   TATCAACRTGTAAGTAAT
         GAGTAATGTTAG GAGAT AAATTT   GA       TTTG AAA TAAA                           GTT                  
         |||||||||||| ||||| ||||||   ||       |||| ||| ||||                           |||                  A
         CTCATTACGATC CTCTG TTTAAA   CT       AAAC TTT ATTT                           GTA                  
AATATTTTA            -     A      CAC  -GTTTCA    T   A    ------------------------TCT   TCTTYAACTACTAACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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