SE3050216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_353
  • Malus domestica
  • SE3050216
  • PIF/harbinger
  • MadP4
  • MDC006798.473:28814-29228
  • TTA
  • AGGGAGGTGTATTCAATTGAGAGTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    A                 G   A  AAACTTTA      ----- TATAAATCCATGGATTTTTATGGAATTTAATTGATTTGTAGCGATTCCATAAAATTTTGATTCAATTCCCTCAAAATCTCATAGGGAGATGTGATATTTGTGGATGCTTAAAATAATACACTACAAAATCTCTCTAATTCCCTCTAATTCCTCAATTTTTTTT
  AGGG GGTGTATTCAATTGAGA TTT AG        ATGGAT     T                                                                                                                                                                   
  |||| ||||||||||||||||| ||| ||        ||||||     |                                                                                                                                                                    
  TCTC CCATATAAGTTAACTCT AAA TC        CCTAAA     G                                                                                                                                                                   
AT    C                 A   C  --------      ATCAA AAGATTACTTCATAAGTTAGTCATAAAATTCACTAAAAGAGTTTAAGTTCCACATTAGTTAGTACTAAAATTTTAGGAAGGTTTAGGCACATAAATTAATACTAAAATTTCTTTAAATATTGTAAGGTCCCCATAATTAATCTTTAACTAAAATTTCTTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3