SE3030218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_355
  • Malus domestica
  • SE3030218
  • hAT
  • Madh10
  • MDC006022.670:4242-4678
  • GTCCAACG
  • GTCCAACGTAGGCCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
   CCA  G        GCATTTT             TAACCCGACCCGACCCAACCCGTTAATATTTGTATTTGGGTGGATGCTTAACGGGTCGGGTCGCTAACGGGTGAACCCGTTAACAACCCGTTAAATAACGGGTCACTTTGGGTCAACCCGTTAACCCGTTKGGWCCCMTTAGCACCCGTTAGTTGAGGATATTTTAGTAATTTTAGTAAAGTCTT
 GT   AC TAGGCCTG       GGACCCAACCCGT                                                                                                                                                                                         
 ||   || ||||||||       |||||||||||||                                                                                                                                                                                          
 CA   TG ATCTGGAC       TTGCCCAGCCCAA                                                                                                                                                                                         
G  ACC  -        -----AT             ATAACCCAAACCCAGCCCAACTTGGGCTGGGCAATTCAATTACCCAGTGGGCTTGGGTTGGGCAATTCGATTGCCCAGTGGGCTTGGGCTGGGCAATTCGATTGCCCAGTGGGCAAAGTAGGCAATTGTGGGCAATTGTTAATAATAAWWAAAAAAAAAAACGTATTTCAAATAAAAAACAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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