SE3020221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_358
  • Malus domestica
  • SE3020221
  • Mutator
  • MadM15
  • MDC021502.266:1663-1875
  • AAACTTTAG
  • GGAAAGGGATCCGCTTCGATCTGTTCCACAAAATCCTTCTCATCAACTATCCAGGCATTTGAACTTTGATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAACTTTAG            G  TC     G      AA         C     - T  C     A      C      CC  C     CAAAC    GCCCACTTTAA
         GGAAAGGGATCC CT  GATCT TTCCAC  AATCCTTCT ATCAA C AT CAGGC TTTGAA TTTGAT  AA GGCTA     AGGG           
         |||||||||||| ||  ||||| ||||||  ||||||||| ||||| | || ||||| |||||| ||||||  || |||||     ||||            
         CCTTTCCCTAGG GG  CTAGG AAGGTG  TTAGGAGGG TAGTT G TA GTCTG GAATTT AAACTA  TT CCGAT     TTTA           
GATTTTAAA            A  -C     G      GC         T     T T  A     G      T      AA  A     -----    ATAATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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