Plant MITE

SE3020223

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_360
Malus domestica
SE3020223
Mutator
MadM11
MDC004459.234:36264-36426
TTTTTGGAG
GGAGGGGTGTGATATCTACACACCCCATTTTACTTCTCACACACCCTTCTAATTTTTGGCC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTT           A               TT                   -C   T     G  -    GATAGGATGA
     GGAGGGGTGTG TATCTACACACCCCA  TTACTTCTCACACACCCTT  TAA TTTTG CC TTCA          
     ||||||||||| |||||||||||||||  |||||||||||||||||||  ||| ||||| || ||||          A
     TTTCCCCACAC ATAGGTGTGTGGGGT  AATGAAGAGTGTGTGGGAA  ATT AAGAT GG AACT          
AGGTT           G               TT                   CA   T     A  C    AGAAGAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020223

TTTTTGGAGGGGTGTGATATCTACACACCCCATTTTACTTCTCACACACCCTTCTAATTTTTGGCCTTCAGATAGGATGAATTGAAGAAGATCAACGGATAGAATTTAACAAGGGTGTGTGAGAAGTAATTTGGGGTGTGTGGATAGCACACCCCTTTTTGGA

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