Plant MITE

SE3020224

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_361
Malus domestica
SE3020224
Mutator
MadM41
MDC016345.295:458-673
CTGTTATCA
TGTTATCAGGATTTGGATCCTCTCATGAGCTAATGGAGAGGATCCTCCTGACCAGTTATCGTGAATCGTTGAATTTTTATCCAAT

Secondary structure and sequence

TSD TIR

5'

3'

C  T  T    -             CA          G           C           C   AA                    YYSTARAAACAGCGGATTCWTTTAA        T
 TG TA CAGG ATTTGGATCCTCT  TGAGCTAATG AGAGGATCCTC TGACCAGTTAT GTG  TCGTTGAATTTTTATCCAAT                         AGTTATAA 
 || || |||| |||||||||||||  |||||||||| ||||||||||| ||||||||||| |||  ||||||||||||||||||||                         |||||||| A
 AC AT GTCC TAAACCTAGGAGA  ACTCGATTAC TCTCCTAGGAG ACTGGTCAGTA CAC  GGCAATTTAAAAATAGGTTG                         TCAATATT 
   T  T    C             AG          R           A           Y   CC                    -------------------------        A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020224

CTGTTATCAGGATTTGGATCCTCTCATGAGCTAATGGAGAGGATCCTCCTGACCAGTTATCGTGAATCGTTGAATTTTTATCCAATYYSTARAAACAGCGGATTCWTTTAAAGTTATAATAATTATAACTGTTGGATAAAAATTTAACGGCCCACYATGACTGGTCAAGAGGATCCTCTRCATTAGCTCAGAAGAGGATCCAAATCCCTGTTATCA

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