Plant MITE

SE3020227

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_364
Malus domestica
SE3020227
Mutator
MadM60
MDC010004.152:27962-28148
GATTGCAAA
TTGCAAAGAACAATATTTGGCTGCTGAAAATTCAACTGTCATTCCTGCTTTCATCCAATCAGATTTGAATACATGTTTAA

Secondary structure and sequence

TSD TIR

5'

3'

GA      -A                           A T       C     TC       C       A            -TTTG  TTTAT
  TTGCAA  GAACAATATTTGGCTGCTGAAAATTCA C GTCATTC TGCTT  ATCCAAT AGATTTG ATACATGTTTAA     TG     
  ||||||  ||||||||||||||||||||||||||| | ||||||| |||||  ||||||| ||||||| ||||||||||||     ||      
  AACGTT  TTTGTTATGAACCGATGACTTTTAAGT G TAGTGAG ATGAA  TAGGTTA TCTAGAC TGTGTACAGATT     AC     
 A      AG                           C T       R     TA       A       C            TATTA  TTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020227

GATTGCAAAGAACAATATTTGGCTGCTGAAAATTCAACTGTCATTCCTGCTTTCATCCAATCAGATTTGAATACATGTTTAATTTGTGTTTATAATTTCAATTATTTAGACATGTGTCCAGATCTAATTGGATATAAGTARGAGTGATTGCTGAATTTTCAGTAGCCAAGTATTGTTTGATTGCAAA

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