Plant MITE

SE3020232

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_369
Malus domestica
SE3020232
Mutator
MadM10
MDC008760.382:644-883
CTATTTCCT
GGACAAGGATTGTCTGCCCTCCACTTCTGGTGCCCTCTCCGTGCTCTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTGTTTTTTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

CTATTTCCT                   -    C                              T                                    -------------      TT    AG
         GGACAAGGATTGTCTGCCC TCCA TTCTGGTGCCCTCTCCGTGCTCTCCTGTTT GTGTGGTCACGGTTAAGCCACGTCAACATTTTATAT             TGTTTT  TTAT  
         ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||             ||||||  ||||   
         CCTGTTCCTAACAGACGGG AGGT AAGGCCACGGGAGAGGCACGGGAGGACAAA CACATCAGTGTCAATTCGGTGCAGTTGTAAAATATA             ACAGAA  AATA  
TCCTTTATC                   G    A                              -                                    ATGATAAGTAAAA      -T    GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020232

CTATTTCCTGGACAAGGATTGTCTGCCCTCCACTTCTGGTGCCCTCTCCGTGCTCTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTGTTTTTTTTATAGAGATAATAAGACAAAAATGAATAGTAATATAAAATGTTGACGTGGCTTAACTGTGACTACACAAACAGGAGGGCACGGAGAGGGCACCGGAAATGGAGGGGCAGACAATCCTTGTCCCTATTTCCT

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