Plant MITE

SE3020237

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_374
Malus domestica
SE3020237
Mutator
MadM11
MDC012545.302:5797-5962
TTTTTTTTT
GGGGTGTGCTATTCACACGCCTTTTTTTACTTCTCACACACCTTTTGTTAATTTTTGCCCTTTGATCTTCT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTTTT                                 TC          TG       -TT   C  T    TT  TTA
         GGGGTGTGCTATTCACACGCCTTTTTTTACTTC  ACACACCTTT  TTAATTT   GCC TT GATC  CT   
         |||||||||||||||||||||||||||||||||  ||||||||||  |||||||   ||| || ||||  ||   A
         CCCCACACGATAGGTGTGTGGGGAAAAATGAAG  TGTGTGGGAG  AATTAAA   CGG AA CTAG  GA   
TTTTTTTTT                                 TA          --       CAC   C  C    TT  CTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020237

TTTTTTTTTGGGGTGTGCTATTCACACGCCTTTTTTTACTTCTCACACACCTTTTGTTAATTTTTGCCCTTTGATCTTCTTTAATTCAGTTGATCCAACGGCCACAAATTAAGAGGGTGTGTATGAAGTAAAAAGGGGTGTGTGGATAGCACACCCCTTTTTTTTT

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