SE3020238

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_375
  • Malus domestica
  • SE3020238
  • Mutator
  • MadM62
  • MDC008250.260:1605-1822
  • ATTATTTCG
  • GAGTACAGATCCTCTTCGGATCTTAAAAAAAAAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTTCG             C         TA       A   ATCTAAA        GATACAT      G          AAATA    TAAATAAGAAATTTCTCTA
         GAGTACAGATCCT TTCGGATCT  AAAAAAA GGA       GATCAAAT       ATCGTT AAATTTGATC     ATTA                   
         ||||||||||||| |||||||||  ||||||| |||       ||||||||       |||||| ||||||||||     ||||                    
         CTCATGTCTAGGA AGGTCTAGA  TTTTTTT CCT       CTAGTTTA       TAGCAA TTTAAATTAG     TTGC                   
GCATTATTA             A         --       A   CGAATCC        ATAGACC      A          ----G    CGATGCAAATAATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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