SE3030240

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_377
  • Malus domestica
  • SE3030240
  • hAT
  • Madh11
  • MDC016584.351:4433-5120
  • CTTTCAGT
  • AGTCAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
 CTTTC  T              CCTTTAGAC        -------   C   CCTATCCTAAAAAAGCCTATCCTAAAATTATTTTTTCCTAACAACTTTTACTATCATTAATTAATTTTATAATACCACTATCAACTTGAATTTGTGTTGTATTTGTCAGTCCAATTAACTTCAATCCAACAAATACAAAGCCTTAAATTTTTTGCATTAAAGATTCGAAATTATAGTTCTATACTAATATTAGTTGATCATATTCTCTGTTTCTTGCCTATCTACATTTTTTTCCTTTGCTTGTAGACTATTATTTTGGTAAATTTCTCATTTTCCTCTATTAGATCGTCTATGAAA
      AG CAGTGGCGGAGCCA         TAGGATAG       GCT GGG                                                                                                                                                                                                                                                                                                         
      || ||||||||||||||         ||||||||       ||| |||                                                                                                                                                                                                                                                                                                         T
      TC GTCACCGCCTCGGT         AAGTACAA       CGT GTG                                                                                                                                                                                                                                                                                                         
TGACTT  -              -----CTTT        TCCTCCC   -   AAATTTGGTTTTACCTGTATTATATACGTCTTTGATAGAGCAAGAAAACCGGCGGACTCACTGGTACGTAATTAAGAAGTAATGTTTACTAGTTGATGTAGTTCTCAACTTTTATTTTGTAATAATATTCGTGTAGGTAAATAAGAAGTAAGAACTATAGTTTAAGTTTACATTGACTGGTACGTAAGTAAAAGAGTATCACCGGTTCTCTTGTAAAAAAAAATTTTTGTACTTCCATACTCTCGTAAACTTCCCAAAAAACACGATTAAACCTTTTTCCTTTATAAAGAGAAGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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