SE3020242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_379
  • Malus domestica
  • SE3020242
  • Mutator
  • MadM34
  • MDC011678.349:13012-13226
  • CTATTTTAG
  • AGGAAAGAGATCATCTTCGGATCTCTTCCACCAAGACCATCGGATCAAGTGATTAGGATCTTTGAAATTTCATCCAACGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTATTTT            A           C     C    AC                 A     T                    AAAAAA     -ATAG   TT
       AGGAAAGAGATC TCTTCGGATCT TTCCA CAAG  CATCGGATCAAGTGATT GGATC TTGAAATTTCATCCAACGGC      TTATT     CTT  
       |||||||||||| ||||||||||| ||||| ||||  ||||||||||||||||| ||||| ||||||||||||||||||||      |||||     |||   
       TCCTTTCTCTAG AGAGGCCTAGA AAGGT GTTC  GTGGCCTAGTTCACTAG CCTGG AACTTTAAAGTAGGTTGCTG      GATAA     GGG  
TTTTATC            G           A     A    CA                 G     T                    --GATG     AACTA   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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