Plant MITE

SE3020243

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_380
Malus domestica
SE3020243
Mutator
MadM10
MDC022103.513:4075-4274
TAAAAAGAG
GGGAGGAGGATTATCTACCCTCCTATTMTCATCCCCTTCCCTCCCCTCCT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAAGA     G      A           -   M  A  --       C         CTCACACATT   -  TTGTCTTATTATCTSTATAAAAAATTC
        GGGAG AGGATT TCTACCCTCCT ATT TC TC  CCCTTCC TCCCCTCCT          GTT TT                           
        ||||| |||||| ||||||||||| ||| || ||  ||||||| |||||||||          ||| ||                            
        TCCTC TCCTAA AGATGGGAGGA TAG AG AG  GGGAAGG AGGGGAGGA          GCA TG                           
GAGAAAAA     A      G           A   -  -  AT       T         --TAAACTTG   G  CCAATTCGGTGCAGTTGTAAAATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020243

TAAAAAGAGGGAGGAGGATTATCTACCCTCCTATTMTCATCCCCTTCCCTCCCCTCCTCTCACACATTGTTTTTTGTCTTATTATCTSTATAAAAAATTCAATATAAAATGTTGACGTGGCTTAACCGTGACGGTTCAAATAGGAGGGGATGGAAGGGTAGAGAGATAAGGAGGGTAGAGAATCCTACTCCTAAAAAGAG

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