Plant MITE

SE3020246

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_383
Malus domestica
SE3020246
Mutator
MadM64
MDC035405.20:13456-13671
CCCAAAAAT
GGAATTGGATTCCCTCCTAAGCAAATGGTGGGGATCCTCMYGACCCACTAATACGGGTTGTTGAATTTTGATCCAACGGYTACAATTAT

Secondary structure and sequence

TSD TIR

5'

3'

CCCAAAAAT                                       MY  C                   AAT       C  C  Y     T   TATAATTTTT
         GGAATTGGATTCCCTCCTAAGCAAATGGTGGGGATCCTC  GA CCACTAATACGGGTTGTTG   TTTGATC AA GG TACAA TAT          
         |||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||   ||||||| || || ||||| |||          A
         CCTTAACCTAGGGGAGGATTCGTTTACCACCCCTAGGAG  CT GGTGATTGTGCCTGGCAAC   AAACTAG TT CC ATGTT GTA          
TAACAACCC                                       TA  A                   -CT       C  A  G     T   CTCYAGRCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020246

CCCAAAAATGGAATTGGATTCCCTCCTAAGCAAATGGTGGGGATCCTCMYGACCCACTAATACGGGTTGTTGAATTTTGATCCAACGGYTACAATTATTATAATTTTTAGACRGAYCTCATGTTTGTAGCCATTCGATCAAATCCAACGGTCCGTGTTAGTGGATCATGAGGATCCCCACCATTTGCTTAGGAGGGGATCCAATTCCCCCAACAAT

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