Plant MITE

SE3020248

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_385
Malus domestica
SE3020248
Mutator
MadM11
MDC015136.168:13222-13385
TTAGAAAAG
AAGGGGTGTGCTATCCACACATCCCATTTTACTTCTCACACACCCCTTGATAATTCATGTCCGTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

TTAGAA          C             C                   CC  GA     CA  T      -   TTCTTCA
      AAGGGGTGTG TATCCACACATCC ATTTTACTTCTCACACACC  TT  TAATT  TG CCGTTG ATC       
      |||||||||| ||||||||||||| |||||||||||||||||||  ||  |||||  || |||||| |||       A
      TTCCCCACAC ATAGGTGTGTGGG TAAAATGAAGAGTGTGTGG  AA  ATTAA  GC GGCAGC TAG       
AAAAGA          T             A                   --  AA     AA  C      C   CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020248

TTAGAAAAGGGGTGTGCTATCCACACATCCCATTTTACTTCTCACACACCCCTTGATAATTCATGTCCGTTGATCTTCTTCAATTCATCCGATCCGACGGCCGAAAATTAAAAAGGTGTGTGAGAAGTAAAATAGGGTGTGTGGATATCACACCCCTTAGAAAA

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