Plant MITE

SE3060252

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_389
Malus domestica
SE3060252
Mim
MadMi1
MDC003395.269:27806-28043
TATATACATA
TATATACATACAAGCCCTTTAAGGGAAGGGATCCCCATTTATTTTTTCAAAAAATGGGGACACACTCTTGATCCTTAGATTTGGCTTTAATGAAATTTTYTGGTTGAGATT

Secondary structure and sequence

TSD TIR

5'

3'

      C   CA             A      C   A   A      CA  A          CAC        C                        TY           AAATCACA
TATATA ATA  AGCCCTTTAAGGG AGGGAT CCC TTT TTTTTT  AA AATGGGGACA   TCTTGATC TTAGATTTGGCTTTAATGAAATTT  TGGTTGAGATT        
|||||| |||  ||||||||||||| |||||| ||| ||| ||||||  || ||||||||||   |||||||| ||||||||||||||||||||||||  |||||||||||         
ATATAT TAT  TTGGGAAATTCCC TCCCTA GGG AAA AAAAAA  TT TTACCCCTGT   AGAACTGG AATCTAAACTGAAATTACTTTAAG  ACCAACTCTAA        
      A   CC             C      Y   W   -      --  A          AGA        C                        TC           AACACCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3060252

TATATACATACAAGCCCTTTAAGGGAAGGGATCCCCATTTATTTTTTCAAAAAATGGGGACACACTCTTGATCCTTAGATTTGGCTTTAATGAAATTTTYTGGTTGAGATTAAATCACAGGCCACAAAATCTCAACCACTGAATTTCATTAAAGTCAAATCTAACGGTCAAGAAGATGTCCCCATTATTAAAAAAAAAWGGGYATCCCTCCCCTTAAAGGGTTCCTATATATATA

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